X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=groupmap.cpp;fp=groupmap.cpp;h=f6705e53db2048691b95050f3005bdccecf21347;hb=8c616f2509abd2fb9485a38607c1b439d243b85c;hp=0e0be0e8cf2799527e2664bb79b1cdded09e215c;hpb=7bf581f8c46b08eb3bb40715dac94695edee4a67;p=mothur.git

diff --git a/groupmap.cpp b/groupmap.cpp
index 0e0be0e..f6705e5 100644
--- a/groupmap.cpp
+++ b/groupmap.cpp
@@ -46,6 +46,32 @@ int GroupMap::readMap() {
 		fileHandle.close();
 		return error;
 }
+/************************************************************/
+int GroupMap::readDesignMap() {
+		string seqName, seqGroup;
+		int error = 0;
+
+		while(fileHandle){
+			fileHandle >> seqName;	m->gobble(fileHandle);		//read from first column
+			fileHandle >> seqGroup;			//read from second column
+			
+			if (m->control_pressed) {  fileHandle.close();  return 1; }
+	
+			setNamesOfGroups(seqGroup);
+			
+			it = groupmap.find(seqName);
+			
+			if (it != groupmap.end()) { error = 1; m->mothurOut("Your designfile contains more than 1 group named " + seqName + ", group names must be unique. Please correct."); m->mothurOutEndLine();  }
+			else {
+				groupmap[seqName] = seqGroup;	//store data in map
+				seqsPerGroup[seqGroup]++;  //increment number of seqs in that group
+			}
+			m->gobble(fileHandle);
+		}
+		fileHandle.close();
+		return error;
+}
+
 /************************************************************/
 int GroupMap::getNumGroups() { return namesOfGroups.size();	}
 /************************************************************/