X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=globaldata.cpp;h=fddb5c9caadb3e2e7fcaf7f940718eacb6c39e30;hb=ec453945974b5c72af0bea042e3517312566d592;hp=494b664fb841389aff6dca6305963d68a1a5a8cf;hpb=ee27b6e01a979fdf832668eb87412b029f77e4d7;p=mothur.git

diff --git a/globaldata.cpp b/globaldata.cpp
index 494b664..fddb5c9 100644
--- a/globaldata.cpp
+++ b/globaldata.cpp
@@ -43,7 +43,7 @@ void GlobalData::parseGlobalData(string commandString, string optionText){
 		}
 		
 		//set default value for cutoff
-		if (commandName == "distance") {	cutoff = "1.0";		}
+		if (commandName == "dist.seq") {	cutoff = "1.0";		}
 
 		string key, value;		
 		//reads in parameters and values
@@ -215,7 +215,7 @@ void GlobalData::parseGlobalData(string commandString, string optionText){
 			Estimators.clear();
 			splitAtDash(calc, Estimators); 
 		}
-		if (commandName == "distance") {
+		if (commandName == "dist.seq") {
 			if ((calc == "default") || (calc == "")) {  calc = "onegap";  }
 			Estimators.clear();
 			splitAtDash(calc, Estimators);