X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=globaldata.cpp;h=b1ac4e87b986cee6380c997c6c40590b089067f7;hb=9651e8e7172d86707b34af15e95ec60ad4c3c3f9;hp=015293d727e5e94c51f1ce2bbe5a7ff6c6a7aee9;hpb=a85da7303079652b569291eacb9c2964060e072b;p=mothur.git

diff --git a/globaldata.cpp b/globaldata.cpp
index 015293d..b1ac4e8 100644
--- a/globaldata.cpp
+++ b/globaldata.cpp
@@ -185,6 +185,7 @@ void GlobalData::parseGlobalData(string commandString, string optionText){
 		
 		//set format for shared
 		if ((listfile != "") && (groupfile != "")) { format = "shared"; }
+		if ((phylipfile != "") && (groupfile != "")) { format = "matrix"; }
 				
 		//input defaults for calculators
 		if (commandName == "collect.single") {