X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=globaldata.cpp;h=015293d727e5e94c51f1ce2bbe5a7ff6c6a7aee9;hb=3c5c4e255ee8c36feb9e97aebc4e792e6ff8c440;hp=66a44f25b7246af237194e634eeeeb9514623899;hpb=0190105145fbd3e02da8f23cb50841229e5d696f;p=mothur.git

diff --git a/globaldata.cpp b/globaldata.cpp
index 66a44f2..015293d 100644
--- a/globaldata.cpp
+++ b/globaldata.cpp
@@ -110,7 +110,6 @@ void GlobalData::parseGlobalData(string commandString, string optionText){
 				if (key == "fileroot" )		{ fileroot = value;		}
 				if (key == "abund" )        { abund = value;        }
 				if (key == "random" )		{ randomtree = value;	}
-				if (key == "groups" )		{ groups = value;	}
 				if (key == "calc")			{ calc = value;		}
 
 				
@@ -160,7 +159,6 @@ void GlobalData::parseGlobalData(string commandString, string optionText){
 			if (key == "fileroot" )		{ fileroot = value;		}
 			if (key == "abund" )        { abund = value;        }
 			if (key == "random" )		{ randomtree = value;	}
-			if (key == "groups" )		{ groups = value;	}
 			if (key == "calc")			{ calc = value;		}
 
 
@@ -261,6 +259,7 @@ string GlobalData::getJumble()			{	return jumble;		}
 string GlobalData::getFreq()			{	return freq;		}
 string GlobalData::getAbund()           {   return abund;       }
 string GlobalData::getRandomTree()		{	return randomtree;	}
+string GlobalData::getGroups()			{	return groups;		}
 void GlobalData::setListFile(string file)	{	listfile = file;	inputFileName = file;}
 void GlobalData::setRabundFile(string file)	{	rabundfile = file;	inputFileName = file;}
 void GlobalData::setSabundFile(string file)	{	sabundfile = file;	inputFileName = file;}
@@ -269,7 +268,8 @@ void GlobalData::setColumnFile(string file)	{	columnfile = file;    inputFileNam
 void GlobalData::setNameFile(string file)		{	namefile = file;		}
 void GlobalData::setFormat(string Format)		{	format = Format;		}
 void GlobalData::setRandomTree(string Random)	{	randomtree = Random;	}
-void GlobalData::setCalc(string Calc)			{	calc = Calc;	}
+void GlobalData::setGroups(string g)			{	groups = g;				}
+void GlobalData::setCalc(string Calc)			{	calc = Calc;			}
 
 /*******************************************************/