X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getsharedotucommand.h;h=f03b5ddcf6b5de00eba42210d39c74e46848d73c;hb=372fb21ea66ced432b109225851a1b80ef0491a3;hp=583c2e001a00607cd97771e8fdfa42cbd8866c9f;hpb=1a5c2356c1b955c6ec024b2baf9f46377ee7c72e;p=mothur.git

diff --git a/getsharedotucommand.h b/getsharedotucommand.h
index 583c2e0..f03b5dd 100644
--- a/getsharedotucommand.h
+++ b/getsharedotucommand.h
@@ -14,6 +14,8 @@
 #include "listvector.hpp"
 #include "sequence.hpp"
 #include "groupmap.h"
+#include "sharedrabundvector.h"
+#include "inputdata.h"
 
 //**********************************************************************************************************************
 class GetSharedOTUCommand : public Command {
@@ -44,7 +46,7 @@ class GetSharedOTUCommand : public Command {
 		GroupMap* groupMap;
 		
 		set<string> labels;
-		string fastafile, label, groups, listfile, groupfile, output, userGroups, outputDir, format;
+		string fastafile, label, groups, listfile, groupfile, sharedfile, output, userGroups, outputDir, format;
 		bool abort, allLines, unique;
 		vector<string> Groups;
 		map<string, string> groupFinder;
@@ -53,6 +55,8 @@ class GetSharedOTUCommand : public Command {
 		vector<string> outputNames;
 		
 		int process(ListVector*);
+        int process(vector<SharedRAbundVector*>&);
+        int runShared();
 		
 };
 //**********************************************************************************************************************