X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getsharedotucommand.h;h=30a5cd2468ab7ec8bb741729f4cb390e8a8f7c1d;hb=bd93b1a6f9fe9a6a4a7ac2e9f106e5c83a438856;hp=3b14b39bb70e8939641dea69c2e53bcb98a82ffa;hpb=c82900be3ceed3d9bc491bdc98b1819ef85c1af7;p=mothur.git

diff --git a/getsharedotucommand.h b/getsharedotucommand.h
index 3b14b39..30a5cd2 100644
--- a/getsharedotucommand.h
+++ b/getsharedotucommand.h
@@ -33,14 +33,15 @@ class GetSharedOTUCommand : public Command {
 		GroupMap* groupMap;
 		
 		set<string> labels;
-		string fastafile, label, groups, listfile, groupfile, output;
+		string fastafile, label, groups, listfile, groupfile, output, userGroups, outputDir;
 		bool abort, allLines, unique;
 		vector<string> Groups;
 		map<string, string> groupFinder;
 		map<string, string>::iterator it;
 		vector<Sequence> seqs;
+		vector<string> outputNames;
 		
-		void process(ListVector*);
+		int process(ListVector*);
 		
 };
 //**********************************************************************************************************************