X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getsharedotucommand.h;h=30a5cd2468ab7ec8bb741729f4cb390e8a8f7c1d;hb=6e8fce385a566f51350274309503d7405e5b9f35;hp=6470961cdb204dac5992344ed3a5e91bd3ec797a;hpb=d2fc851cdaf57874b3ac8261b220fad35750daad;p=mothur.git

diff --git a/getsharedotucommand.h b/getsharedotucommand.h
index 6470961..30a5cd2 100644
--- a/getsharedotucommand.h
+++ b/getsharedotucommand.h
@@ -33,14 +33,15 @@ class GetSharedOTUCommand : public Command {
 		GroupMap* groupMap;
 		
 		set<string> labels;
-		string fastafile, label, groups, listfile, groupfile, output;
-		bool abort, allLines;
+		string fastafile, label, groups, listfile, groupfile, output, userGroups, outputDir;
+		bool abort, allLines, unique;
 		vector<string> Groups;
 		map<string, string> groupFinder;
 		map<string, string>::iterator it;
 		vector<Sequence> seqs;
+		vector<string> outputNames;
 		
-		void process(ListVector*);
+		int process(ListVector*);
 		
 };
 //**********************************************************************************************************************