X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getsharedotucommand.h;h=0e25721b6ca2bcd53967261e7fab18bb0dbead54;hb=3a13eff5c26d6fc156a299c9fa7f5497bded94a0;hp=3b14b39bb70e8939641dea69c2e53bcb98a82ffa;hpb=c82900be3ceed3d9bc491bdc98b1819ef85c1af7;p=mothur.git

diff --git a/getsharedotucommand.h b/getsharedotucommand.h
index 3b14b39..0e25721 100644
--- a/getsharedotucommand.h
+++ b/getsharedotucommand.h
@@ -22,7 +22,12 @@ class GetSharedOTUCommand : public Command {
 	public:
 	
 		GetSharedOTUCommand(string);	
+		GetSharedOTUCommand();	
 		~GetSharedOTUCommand();
+		vector<string> getRequiredParameters();
+		vector<string> getValidParameters();
+		vector<string> getRequiredFiles();
+		map<string, vector<string> > getOutputFiles() { return outputTypes; }
 		int execute();
 		void help();	
 		
@@ -33,14 +38,16 @@ class GetSharedOTUCommand : public Command {
 		GroupMap* groupMap;
 		
 		set<string> labels;
-		string fastafile, label, groups, listfile, groupfile, output;
+		string fastafile, label, groups, listfile, groupfile, output, userGroups, outputDir;
 		bool abort, allLines, unique;
 		vector<string> Groups;
 		map<string, string> groupFinder;
 		map<string, string>::iterator it;
 		vector<Sequence> seqs;
+		vector<string> outputNames;
+		map<string, vector<string> > outputTypes;
 		
-		void process(ListVector*);
+		int process(ListVector*);
 		
 };
 //**********************************************************************************************************************