X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getsharedotucommand.cpp;h=7746ef9873498cf43dfb33c735757908606e673d;hb=e88ba6b7a994a8502030d38cc5cc542994694d4d;hp=6ca4ee2d3dd5630c1ee38efaffe268a1e5f130c3;hpb=0486bc2eed084ac387d2f59b6d23d13b2382daf7;p=mothur.git diff --git a/getsharedotucommand.cpp b/getsharedotucommand.cpp index 6ca4ee2..7746ef9 100644 --- a/getsharedotucommand.cpp +++ b/getsharedotucommand.cpp @@ -196,7 +196,7 @@ void GetSharedOTUCommand::help(){ m->mothurOut("The output parameter allows you to output the list of names without the group and bin number added. \n"); m->mothurOut("With this option you can use the names file as an input in get.seqs and remove.seqs commands. To do this enter output=accnos. \n"); m->mothurOut("The get.sharedseqs command outputs a .names file for each distance level containing a list of sequences in the OTUs shared by the groups specified.\n"); - m->mothurOut("The get.sharedseqs command should be in the following format: get.sabund(label=yourLabels, groups=yourGroups, fasta=yourFastafile, output=yourOutput).\n"); + m->mothurOut("The get.sharedseqs command should be in the following format: get.sharedseqs(label=yourLabels, groups=yourGroups, fasta=yourFastafile, output=yourOutput).\n"); m->mothurOut("Example get.sharedseqs(list=amazon.fn.list, label=unique-0.01, group=forest-pasture, fasta=amazon.fasta, output=accnos).\n"); m->mothurOut("The output to the screen is the distance and the number of otus at that distance for the groups you specified.\n"); m->mothurOut("The default value for label is all labels in your inputfile. The default for groups is all groups in your file.\n");