X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getseqscommand.h;h=ea93b5a1c4e0427cc43157a5d77f995bb3f2308b;hb=8bc3e5b38c2317a1715f53be22fa96455868c281;hp=9d8e7960f5c2e949f021602aaf1aa36e7d3e82e0;hpb=14edc148cb299c5624f72bb681375b704aa74f43;p=mothur.git

diff --git a/getseqscommand.h b/getseqscommand.h
index 9d8e796..ea93b5a 100644
--- a/getseqscommand.h
+++ b/getseqscommand.h
@@ -17,7 +17,12 @@ class GetSeqsCommand : public Command {
 	public:
 	
 		GetSeqsCommand(string);
+		GetSeqsCommand();
 		~GetSeqsCommand(){};
+		vector<string> getRequiredParameters();
+		vector<string> getValidParameters();
+		vector<string> getRequiredFiles();
+		map<string, vector<string> > getOutputFiles() { return outputTypes; }
 		int execute();
 		void help();	
 		
@@ -25,7 +30,8 @@ class GetSeqsCommand : public Command {
 		set<string> names;
 		vector<string> outputNames;
 		string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, taxfile, outputDir;
-		bool abort;
+		bool abort, dups;
+		map<string, vector<string> > outputTypes;
 		
 		int readFasta();
 		int readName();