X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getseqscommand.h;h=c5b6ca4141afc00c12b646ea34604b898b1c4131;hb=1a968f34ae2d2680eaf189a197d1a21b8dfd6c03;hp=42070e53a57cf05c6d5674e022c602636fa374bf;hpb=1a5c2356c1b955c6ec024b2baf9f46377ee7c72e;p=mothur.git

diff --git a/getseqscommand.h b/getseqscommand.h
index 42070e5..c5b6ca4 100644
--- a/getseqscommand.h
+++ b/getseqscommand.h
@@ -38,7 +38,7 @@ class GetSeqsCommand : public Command {
 		vector<string> outputNames;
 		string accnosfile, accnosfile2, fastafile, namefile, countfile, groupfile, alignfile, listfile, taxfile, qualfile, outputDir;
 		bool abort, dups;
-    
+        map<string, string> uniqueMap;
         //for debug
         map<string, set<string> > sanity; //maps file type to names chosen for file. something like "fasta" -> vector<string>. If running in debug mode this is filled and we check to make sure all the files have the same names. If they don't we output the differences for the user.