X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getseqscommand.h;h=4f4c809e51e7f9308ae4f372bdd2195eb964f6c3;hb=28d6f2bddc5c0718ae7f63648be3130a35fb0f02;hp=809109c486de9f00b39091b863da8a23dfc95a96;hpb=74844a60d80c6dd06e3fb02ee9b928424f9019b0;p=mothur.git

diff --git a/getseqscommand.h b/getseqscommand.h
index 809109c..4f4c809 100644
--- a/getseqscommand.h
+++ b/getseqscommand.h
@@ -24,15 +24,16 @@ class GetSeqsCommand : public Command {
 	private:
 		set<string> names;
 		vector<string> outputNames;
-		string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, outputDir;
-		bool abort;
+		string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, taxfile, outputDir;
+		bool abort, dups;
 		
-		void readFasta();
-		void readName();
-		void readGroup();
-		void readAlign();
-		void readAccnos();
-		void readList();
+		int readFasta();
+		int readName();
+		int readGroup();
+		int readAlign();
+		int readAccnos();
+		int readList();
+		int readTax();
 		
 };