X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getseqscommand.h;h=4f4c809e51e7f9308ae4f372bdd2195eb964f6c3;hb=28d6f2bddc5c0718ae7f63648be3130a35fb0f02;hp=24f3968786784965e343f88aef300cad80c54eb4;hpb=315e38cf393c82be238da5b32574f225a020d25c;p=mothur.git

diff --git a/getseqscommand.h b/getseqscommand.h
index 24f3968..4f4c809 100644
--- a/getseqscommand.h
+++ b/getseqscommand.h
@@ -16,22 +16,24 @@ class GetSeqsCommand : public Command {
 	
 	public:
 	
-		GetSeqsCommand(string);	
+		GetSeqsCommand(string);
 		~GetSeqsCommand(){};
 		int execute();
 		void help();	
 		
 	private:
 		set<string> names;
-		string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, outputDir;
-		bool abort;
+		vector<string> outputNames;
+		string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, taxfile, outputDir;
+		bool abort, dups;
 		
-		void readFasta();
-		void readName();
-		void readGroup();
-		void readAlign();
-		void readAccnos();
-		void readList();
+		int readFasta();
+		int readName();
+		int readGroup();
+		int readAlign();
+		int readAccnos();
+		int readList();
+		int readTax();
 		
 };