X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getseqscommand.h;fp=getseqscommand.h;h=aef789aa7dd80a656a66c3061a2e8cadd1fe081b;hb=de67504f85e091a3049ef4c5df8e77f7dcb1d814;hp=b249072e41aba8b7ff0501c1fc946b90c48dfd22;hpb=136158a07155d3484f9318b553c38e57405f9a3d;p=mothur.git

diff --git a/getseqscommand.h b/getseqscommand.h
index b249072..aef789a 100644
--- a/getseqscommand.h
+++ b/getseqscommand.h
@@ -29,7 +29,7 @@ class GetSeqsCommand : public Command {
 	private:
 		set<string> names;
 		vector<string> outputNames;
-		string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, taxfile, qualfile, outputDir;
+		string accnosfile, accnosfile2, fastafile, namefile, groupfile, alignfile, listfile, taxfile, qualfile, outputDir;
 		bool abort, dups;
 		map<string, vector<string> > outputTypes;
 		
@@ -41,6 +41,7 @@ class GetSeqsCommand : public Command {
 		int readList();
 		int readTax();
 		int readQual();
+		int compareAccnos();
 		
 };