X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getseqscommand.cpp;h=a191515cb601408b2c7d884b895f7e14d668d798;hb=d04f948b1a2a1a2984fc4a45d04403b8c121c5bc;hp=a16accbb8ac724b1fce6579a7bcad9b2f5b261c7;hpb=5b3bedc6fbfed63854cc6a7d47454580b2734c08;p=mothur.git

diff --git a/getseqscommand.cpp b/getseqscommand.cpp
index a16accb..a191515 100644
--- a/getseqscommand.cpp
+++ b/getseqscommand.cpp
@@ -190,6 +190,7 @@ GetSeqsCommand::GetSeqsCommand(string option)  {
 			
 			accnosfile2 = validParameter.validFile(parameters, "accnos2", true);
 			if (accnosfile2 == "not open") { abort = true; }
+			if (accnosfile2 == "not found") { accnosfile2 = ""; }
 			
 			fastafile = validParameter.validFile(parameters, "fasta", true);
 			if (fastafile == "not open") { abort = true; }