X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getseqscommand.cpp;h=9538698a3fea181430056d11f16835f66186452e;hb=ace98dda2bb2e1cffd6755fb8a27e5080af66f2b;hp=142023e7a40881c1c6397a761ba350132490b75c;hpb=af0a94ea8f02421b2b73e77e68753a2b4c37768e;p=mothur.git diff --git a/getseqscommand.cpp b/getseqscommand.cpp index 142023e..9538698 100644 --- a/getseqscommand.cpp +++ b/getseqscommand.cpp @@ -45,7 +45,7 @@ string GetSeqsCommand::getHelpString(){ helpString += "The get.seqs command reads an .accnos file and any of the following file types: fasta, name, group, count, list, taxonomy, quality or alignreport file.\n"; helpString += "It outputs a file containing only the sequences in the .accnos file.\n"; helpString += "The get.seqs command parameters are accnos, fasta, name, group, list, taxonomy, qfile, alignreport and dups. You must provide accnos unless you have a valid current accnos file, and at least one of the other parameters.\n"; - helpString += "The dups parameter allows you to add the entire line from a name file if you add any name from the line. default=false. \n"; + helpString += "The dups parameter allows you to add the entire line from a name file if you add any name from the line. default=true. \n"; helpString += "The get.seqs command should be in the following format: get.seqs(accnos=yourAccnos, fasta=yourFasta).\n"; helpString += "Example get.seqs(accnos=amazon.accnos, fasta=amazon.fasta).\n"; helpString += "Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFasta).\n";