X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getseqscommand.cpp;h=7fdf6ed7084463b4e875c8fa01a4e4f9b13db513;hb=5c80ce8b80938d41cf6c64a017fa6fd50d45de5b;hp=f40c89b3fb3eff837729bc203055d11ef1a3c5a5;hpb=62cdb3eb996664abdb8fee21bf4a329cd0694867;p=mothur.git

diff --git a/getseqscommand.cpp b/getseqscommand.cpp
index f40c89b..7fdf6ed 100644
--- a/getseqscommand.cpp
+++ b/getseqscommand.cpp
@@ -123,6 +123,7 @@ GetSeqsCommand::GetSeqsCommand(string option)  {
 			
 			int okay = 2;
 			if (outputDir != "") { okay++; }
+			if (inputDir != "")	{ okay++; }
 			
 			if (parameters.size() > okay) { m->mothurOut("You may only enter one of the following: fasta, name, group, alignreport or listfile."); m->mothurOutEndLine(); abort = true;  }
 		}