X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getsabundcommand.cpp;h=5425c41a917f4b02d67c5b4dfcb63e1b2fc6159b;hb=f320651dfb5359e6bba597280753553de28a2154;hp=4ae2eaa004f9df9cc75c12b63626ffa7fad71ea7;hpb=19fcbbdba99658f5eca244803280f9ee7f9f6607;p=mothur.git

diff --git a/getsabundcommand.cpp b/getsabundcommand.cpp
index 4ae2eaa..5425c41 100644
--- a/getsabundcommand.cpp
+++ b/getsabundcommand.cpp
@@ -45,7 +45,26 @@ string GetSAbundCommand::getHelpString(){
 		exit(1);
 	}
 }
-
+//**********************************************************************************************************************
+string GetSAbundCommand::getOutputFileNameTag(string type, string inputName=""){	
+	try {
+        string outputFileName = "";
+		map<string, vector<string> >::iterator it;
+        
+        //is this a type this command creates
+        it = outputTypes.find(type);
+        if (it == outputTypes.end()) {  m->mothurOut("[ERROR]: this command doesn't create a " + type + " output file.\n"); }
+        else {
+            if (type == "sabund")            {   outputFileName = "sabund";  }
+            else { m->mothurOut("[ERROR]: No definition for type " + type + " output file tag.\n"); m->control_pressed = true;  }
+        }
+        return outputFileName;
+	}
+	catch(exception& e) {
+		m->errorOut(e, "GetSAbundCommand", "getOutputFileNameTag");
+		exit(1);
+	}
+}
 //**********************************************************************************************************************
 GetSAbundCommand::GetSAbundCommand(){	
 	try {
@@ -166,7 +185,7 @@ int GetSAbundCommand::execute(){
 	try {
 		
 		if (abort == true) { if (calledHelp) { return 0; }  return 2;	}
-		filename = outputDir + m->getRootName(m->getSimpleName(inputfile)) + "sabund";
+		filename = outputDir + m->getRootName(m->getSimpleName(inputfile)) + getOutputFileNameTag("sabund");
 		m->openOutputFile(filename, out);
 		
 		input = new InputData(inputfile, format);