X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getrelabundcommand.cpp;h=4d155f2f0fda2b4462450ad5e2789e70a12b13d7;hb=762b3e4c83e1e8e8392c1199b6482d36ee89e50f;hp=8293c9b31485bad93f1bb8875f2e53fc28a1d746;hpb=1dc7ed939c314b3057dad3a834e9739fb7ecfbe6;p=mothur.git diff --git a/getrelabundcommand.cpp b/getrelabundcommand.cpp index 8293c9b..4d155f2 100644 --- a/getrelabundcommand.cpp +++ b/getrelabundcommand.cpp @@ -94,7 +94,7 @@ void GetRelAbundCommand::help(){ m->mothurOut("The label parameter allows you to select what distance levels you would like, and are also separated by dashes.\n"); m->mothurOut("The scale parameter allows you to select what scale you would like to use. Choices are totalgroup, totalotu, averagegroup, averageotu, default is totalgroup.\n"); m->mothurOut("The get.relabund command should be in the following format: get.relabund(groups=yourGroups, label=yourLabels).\n"); - m->mothurOut("Example get.relabund(groups=A-B-C, scale=log10).\n"); + m->mothurOut("Example get.relabund(groups=A-B-C, scale=averagegroup).\n"); m->mothurOut("The default value for groups is all the groups in your groupfile, and all labels in your inputfile will be used.\n"); m->mothurOut("The get.relabund command outputs a .relabund file.\n"); m->mothurOut("Note: No spaces between parameter labels (i.e. groups), '=' and parameters (i.e.yourGroups).\n\n");