X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getrelabundcommand.cpp;h=08e9228b215819f5e19e4d697137384294392422;hb=37eac2026d91179acda0494c4dcca22f176551b9;hp=8c28c47b220e1554972d3cdb97bd2218af4f1c77;hpb=605ab6fa594317a38f0df7bb6797740c735b2348;p=mothur.git

diff --git a/getrelabundcommand.cpp b/getrelabundcommand.cpp
index 8c28c47..08e9228 100644
--- a/getrelabundcommand.cpp
+++ b/getrelabundcommand.cpp
@@ -275,8 +275,6 @@ int GetRelAbundCommand::execute(){
 
 int GetRelAbundCommand::getRelAbundance(vector<SharedRAbundVector*>& thisLookUp, ofstream& out){
 	try {
-		if (pickedGroups) { eliminateZeroOTUS(thisLookUp); }
-
 		
 		 for (int i = 0; i < thisLookUp.size(); i++) {
 			out << thisLookUp[i]->getLabel() << '\t' << thisLookUp[i]->getGroup() << '\t' << thisLookUp[i]->getNumBins() << '\t';
@@ -320,48 +318,5 @@ int GetRelAbundCommand::getRelAbundance(vector<SharedRAbundVector*>& thisLookUp,
 	}
 }
 //**********************************************************************************************************************
-int GetRelAbundCommand::eliminateZeroOTUS(vector<SharedRAbundVector*>& thislookup) {
-	try {
-		
-		vector<SharedRAbundVector*> newLookup;
-		for (int i = 0; i < thislookup.size(); i++) {
-			SharedRAbundVector* temp = new SharedRAbundVector();
-			temp->setLabel(thislookup[i]->getLabel());
-			temp->setGroup(thislookup[i]->getGroup());
-			newLookup.push_back(temp);
-		}
-		
-		//for each bin
-		for (int i = 0; i < thislookup[0]->getNumBins(); i++) {
-			if (m->control_pressed) { for (int j = 0; j < newLookup.size(); j++) {  delete newLookup[j];  } return 0; }
-		
-			//look at each sharedRabund and make sure they are not all zero
-			bool allZero = true;
-			for (int j = 0; j < thislookup.size(); j++) {
-				if (thislookup[j]->getAbundance(i) != 0) { allZero = false;  break;  }
-			}
-			
-			//if they are not all zero add this bin
-			if (!allZero) {
-				for (int j = 0; j < thislookup.size(); j++) {
-					newLookup[j]->push_back(thislookup[j]->getAbundance(i), thislookup[j]->getGroup());
-				}
-			}
-		}
-
-		for (int j = 0; j < thislookup.size(); j++) {  delete thislookup[j];  }
-
-		thislookup = newLookup;
-		
-		return 0;
- 
-	}
-	catch(exception& e) {
-		m->errorOut(e, "GetRelAbundCommand", "eliminateZeroOTUS");
-		exit(1);
-	}
-}
-
-//**********************************************************************************************************************