X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getrabundcommand.h;h=e853ac5f913a1d758e7a633510478ad30449feec;hb=45b880733289694b2a23c9dc8a774aa626458f81;hp=92e8475d154db06761e52ada6d72120bb586ce16;hpb=348a7bac1d3c5d17ae0e4a93b78f69f4e200a190;p=mothur.git

diff --git a/getrabundcommand.h b/getrabundcommand.h
index 92e8475..e853ac5 100644
--- a/getrabundcommand.h
+++ b/getrabundcommand.h
@@ -21,7 +21,12 @@ class GlobalData;
 class GetRAbundCommand : public Command {
 public:
 	GetRAbundCommand(string);
+	GetRAbundCommand();
 	~GetRAbundCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();
 	void help();
 	
@@ -33,11 +38,12 @@ private:
 	InputData* input;
 	ListVector* list;
 	RAbundVector* rabund;
+	vector<string> outputNames;
+	map<string, vector<string> > outputTypes;
 
 	bool abort, allLines, sorted;
-	set<int> lines; //hold lines to be used
 	set<string> labels; //holds labels to be used
-	string line, label;
+	string label;
 
 	
 };