X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getrabundcommand.h;fp=getrabundcommand.h;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=cb9e270d170e0ab9dde910fdb7d24ef6c293828f;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/getrabundcommand.h b/getrabundcommand.h
deleted file mode 100644
index cb9e270..0000000
--- a/getrabundcommand.h
+++ /dev/null
@@ -1,53 +0,0 @@
-#ifndef GETRABUNDCOMMAND_H
-#define GETRABUNDCOMMAND_H
-
-/*
- *  getrabundcommand.h
- *  Mothur
- *
- *  Created by Sarah Westcott on 6/2/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-
-#include "command.hpp"
-#include "inputdata.h"
-#include "listvector.hpp"
-
-
-class GetRAbundCommand : public Command {
-public:
-	GetRAbundCommand(string);
-	GetRAbundCommand();
-	~GetRAbundCommand(){}
-	
-	vector<string> setParameters();
-	string getCommandName()			{ return "get.rabund";				}
-	string getCommandCategory()		{ return "OTU-Based Approaches";	}
-	string getHelpString();	
-	string getCitation() { return "http://www.mothur.org/wiki/Get.rabund"; }
-	string getDescription()		{ return "creates a rabund file"; }
-
-	
-	int execute(); 
-	void help() { m->mothurOut(getHelpString()); }	
-	
-	
-private:
-	
-	string filename, listfile, sabundfile, inputfile, format, outputDir;
-	ofstream out;
-	InputData* input;
-	RAbundVector* rabund;
-	vector<string> outputNames;
-
-	bool abort, allLines, sorted;
-	set<string> labels; //holds labels to be used
-	string label;
-
-	
-};
-
-#endif
-