X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getotuscommand.h;h=c71ab062b431c9ca7945c8e0b8679980058939c8;hb=6b32d112bb60e9f7eb6d4407a4eed4c49b67bced;hp=34562fe7cf8f426048e5f1e71d568039bef1a117;hpb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6;p=mothur.git

diff --git a/getotuscommand.h b/getotuscommand.h
index 34562fe..c71ab06 100644
--- a/getotuscommand.h
+++ b/getotuscommand.h
@@ -27,7 +27,12 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "get.otus";				}
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
+	string getCitation() { return "http://www.mothur.org/wiki/Get.otus"; }
+	string getDescription()		{ return "outputs a new list file containing the otus containing sequences from the groups specified"; }
+
 	
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }	
@@ -39,7 +44,6 @@ private:
 	vector<string> outputNames, Groups;
 	GroupMap* groupMap;
 	
-	void readAccnos();
 	int readListGroup();
 	int processList(ListVector*&, GroupMap*&, ofstream&, ofstream&, bool&);