X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getotuscommand.h;h=c71ab062b431c9ca7945c8e0b8679980058939c8;hb=6b32d112bb60e9f7eb6d4407a4eed4c49b67bced;hp=30f4f3cb0b18aedb2a28348f41f720e967ea1d01;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git

diff --git a/getotuscommand.h b/getotuscommand.h
index 30f4f3c..c71ab06 100644
--- a/getotuscommand.h
+++ b/getotuscommand.h
@@ -27,8 +27,12 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "get.otus";				}
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Get.otus"; }
+	string getDescription()		{ return "outputs a new list file containing the otus containing sequences from the groups specified"; }
+
 	
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }	
@@ -40,7 +44,6 @@ private:
 	vector<string> outputNames, Groups;
 	GroupMap* groupMap;
 	
-	void readAccnos();
 	int readListGroup();
 	int processList(ListVector*&, GroupMap*&, ofstream&, ofstream&, bool&);