X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getotuscommand.h;h=c71ab062b431c9ca7945c8e0b8679980058939c8;hb=3914b0d6480f67df53b1e838f51c4e6155710434;hp=1a784935c476c22c798f8dfda33008606cc43439;hpb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;p=mothur.git

diff --git a/getotuscommand.h b/getotuscommand.h
index 1a78493..c71ab06 100644
--- a/getotuscommand.h
+++ b/getotuscommand.h
@@ -27,7 +27,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "get.otus";				}
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Get.otus"; }
 	string getDescription()		{ return "outputs a new list file containing the otus containing sequences from the groups specified"; }
 
@@ -42,7 +44,6 @@ private:
 	vector<string> outputNames, Groups;
 	GroupMap* groupMap;
 	
-	void readAccnos();
 	int readListGroup();
 	int processList(ListVector*&, GroupMap*&, ofstream&, ofstream&, bool&);