X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getotuscommand.cpp;fp=getotuscommand.cpp;h=4e8d3198c9b6c560d57ff579b26eb9985e452b35;hb=55386dddad84cc1140d736cabaf4dd0ae16f2e01;hp=b94b42a8a37038d188bf19a430a7ee8951f2f86c;hpb=990ded2eb38078a417fa00b4fbb4d3c24f4b5046;p=mothur.git

diff --git a/getotuscommand.cpp b/getotuscommand.cpp
index b94b42a..4e8d319 100644
--- a/getotuscommand.cpp
+++ b/getotuscommand.cpp
@@ -187,7 +187,9 @@ int GetOtusCommand::execute(){
 		//make sure groups are valid
 		//takes care of user setting groupNames that are invalid or setting groups=all
 		SharedUtil* util = new SharedUtil();
-		util->setGroups(Groups, groupMap->namesOfGroups);
+		vector<string> gNamesOfGroups = groupMap->getNamesOfGroups();
+		util->setGroups(Groups, gNamesOfGroups);
+		groupMap->setNamesOfGroups(gNamesOfGroups);
 		delete util;
 		
 		if (m->control_pressed) { delete groupMap; return 0; }