X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getotuscommand.cpp;fp=getotuscommand.cpp;h=15d2bcb8e46454809cdc4441574a469abfc6d6b2;hb=348de0f8b17d84ede77081dcf67bd6ef43496677;hp=f10142bb74a67a9fa98bded8b8a2e0d48fa85358;hpb=5e031adc86a1fc125c4abb3d4048f209d52f9b6d;p=mothur.git

diff --git a/getotuscommand.cpp b/getotuscommand.cpp
index f10142b..15d2bcb 100644
--- a/getotuscommand.cpp
+++ b/getotuscommand.cpp
@@ -207,6 +207,18 @@ int GetOtusCommand::execute(){
 			m->mothurOut("Output File names: "); m->mothurOutEndLine();
 			for (int i = 0; i < outputNames.size(); i++) {	m->mothurOut(outputNames[i]); m->mothurOutEndLine();	}
 			m->mothurOutEndLine();
+			
+			//set list file as new current listfile
+			string current = "";
+			itTypes = outputTypes.find("group");
+			if (itTypes != outputTypes.end()) {
+				if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setGroupFile(current); }
+			}
+			
+			itTypes = outputTypes.find("list");
+			if (itTypes != outputTypes.end()) {
+				if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setListFile(current); }
+			}
 		}
 		
 		return 0;