X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getoturepcommand.h;h=41680008c7dc27b28eb7e9a50ea8e9e621bfeb72;hb=e0ce7cbc93d7d2fbb753ca694182db092a0ea0e7;hp=179a1b3becb27091fbe5fc6e78d1b1f91a70e10d;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git

diff --git a/getoturepcommand.h b/getoturepcommand.h
index 179a1b3..4168000 100644
--- a/getoturepcommand.h
+++ b/getoturepcommand.h
@@ -45,6 +45,8 @@ public:
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
 	string getHelpString();	
 	string getCitation() { return "http://www.mothur.org/wiki/Get.oturep"; }
+	string getDescription()		{ return "gets a representative sequence for each OTU"; }
+
 	
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }	
@@ -79,6 +81,7 @@ private:
 	SeqMap getMap(int);
 	string findRep(vector<string>); 	// returns the name of the "representative" sequence of given bin or subset of a bin, for groups
 	int processNames(string, string);
+	int processFastaNames(string, string);
 };
 
 #endif