X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getoturepcommand.h;fp=getoturepcommand.h;h=874e43ce5a8f45178a073b9d8e8e00fa8852deb0;hb=8bc3e5b38c2317a1715f53be22fa96455868c281;hp=8099a3998c1a63de92d9c72b2c5419c08e2f96ff;hpb=f663afa231c9bc1b5e18e0ea3bdd2b2ee784f5b2;p=mothur.git

diff --git a/getoturepcommand.h b/getoturepcommand.h
index 8099a39..874e43c 100644
--- a/getoturepcommand.h
+++ b/getoturepcommand.h
@@ -39,7 +39,12 @@ class GetOTURepCommand : public Command {
 
 public:
 	GetOTURepCommand(string);
+	GetOTURepCommand();
 	~GetOTURepCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();
 	void help();
 
@@ -66,6 +71,7 @@ private:
 	vector<SeqMap> seqVec;			// contains maps with sequence index and distance
 									// for all distances related to a certain sequence
 	vector<int> rowPositions;
+	map<string, vector<string> > outputTypes;
 
 	void readNamesFile();
 	int process(ListVector*);