X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getoturepcommand.h;fp=getoturepcommand.h;h=86c5434034aae9c7900428bb8ff323385f89b837;hb=13193e6688c91b6a25e39d357caa7f4b4bf5de5f;hp=7890d93db045be399a2854d5d17b314fb748358d;hpb=c9c6df74a855bc1fcecb93cf56eb09d0907e7cf2;p=mothur.git

diff --git a/getoturepcommand.h b/getoturepcommand.h
index 7890d93..86c5434 100644
--- a/getoturepcommand.h
+++ b/getoturepcommand.h
@@ -60,6 +60,7 @@ private:
 	set<string> labels; //holds labels to be used
 	map<string, int> nameToIndex;  //maps sequence name to index in sparsematrix
 	vector<string> outputNames;
+	map<string, string> outputNameFiles;
 	float cutoff;
 	int precision;
 	vector<SeqMap> seqVec;			// contains maps with sequence index and distance
@@ -69,9 +70,9 @@ private:
 	void readNamesFile();
 	int process(ListVector*);
 	SeqMap getMap(int);
-	string findRep(int, string&, ListVector*, int&); 	// returns the name of the "representative" sequence of given bin, 
-									// fills a string containing the groups in that bin if a groupfile is given,
-									// and returns the number of sequences in the given bin
+	string findRep(int, ListVector*); 	// returns the name of the "representative" sequence of given bin
+	int processNames(string, string);
+												
 
 };