X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getoturepcommand.cpp;h=7e71a1a836b2e6306b40d67f5cdce0d7f35dbcdc;hb=6b32d112bb60e9f7eb6d4407a4eed4c49b67bced;hp=d476cc3499844c88014bcef9e1a005459fab3dda;hpb=875ab4b2eec77b920e9fa0042f9a2aae2faff2b0;p=mothur.git

diff --git a/getoturepcommand.cpp b/getoturepcommand.cpp
index d476cc3..7e71a1a 100644
--- a/getoturepcommand.cpp
+++ b/getoturepcommand.cpp
@@ -261,7 +261,7 @@ GetOTURepCommand::GetOTURepCommand(string option)  {
 			else if (countfile == "not open") { abort = true; countfile =  ""; }	
 			else {   
                 m->setCountTableFile(countfile); 
-                ct.readTable(countfile, true);
+                ct.readTable(countfile, true, false);
                 if (ct.hasGroupInfo()) { hasGroups = true; }
             }
             
@@ -1106,7 +1106,7 @@ int GetOTURepCommand::processFastaNames(string filename, string label, FastaMap*
         
         CountTable thisCt;
         if (countfile != "") {
-            thisCt.readTable(countfile, true);
+            thisCt.readTable(countfile, true, false);
             if (tempGroup != "noGroup") { out2 << "Representative_Sequence\ttotal\t" << tempGroup << endl; }
         }
     
@@ -1253,7 +1253,7 @@ int GetOTURepCommand::processNames(string filename, string label) {
         
         CountTable thisCt;
         if (countfile != "") {
-            thisCt.readTable(countfile, true);
+            thisCt.readTable(countfile, true, false);
             if (tempGroup != "noGroup") { out2 << "Representative_Sequence\ttotal\t" << tempGroup << endl; }
         }