X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getoturepcommand.cpp;h=1d26b47b39c3ee998fb018bad12fb4e904b1e333;hb=5c5c0428f6d548c28a8b903ac80efed4f92d59db;hp=9f4dd54491bab042ae243998de20559b03285dfb;hpb=96dbe925073caefaed6e6db85659c144a806aeb1;p=mothur.git

diff --git a/getoturepcommand.cpp b/getoturepcommand.cpp
index 9f4dd54..1d26b47 100644
--- a/getoturepcommand.cpp
+++ b/getoturepcommand.cpp
@@ -574,6 +574,8 @@ int GetOTURepCommand::readDist() {
                 readMatrix->read(nameMap);
             }else if (countfile != "") {
                 readMatrix->read(&ct);
+            }else {
+               readMatrix->read(nameMap); 
             }
 			
 			if (m->control_pressed) { delete readMatrix; return 0; }
@@ -614,9 +616,11 @@ int GetOTURepCommand::readDist() {
             if(namefile != ""){	
                 nameMap = new NameAssignment(namefile);
                 nameMap->readMap();
-                readMatrix->read(nameMap);
+                formatMatrix->read(nameMap);
             }else if (countfile != "") {
-                readMatrix->read(&ct);
+                formatMatrix->read(&ct);
+            }else {
+                formatMatrix->read(nameMap); 
             }
 			
 			if (m->control_pressed) { delete formatMatrix;  return 0; }