X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getmetacommunitycommand.h;h=7697430cca6164b695ed92526dd190926ec1eb5e;hb=3e8b80da722e11c72bce957e2f42a6e884dd02b6;hp=65e5770fdc7c9bc8f4b594fd884f523e4387e40c;hpb=ace98dda2bb2e1cffd6755fb8a27e5080af66f2b;p=mothur.git

diff --git a/getmetacommunitycommand.h b/getmetacommunitycommand.h
index 65e5770..7697430 100644
--- a/getmetacommunitycommand.h
+++ b/getmetacommunitycommand.h
@@ -22,13 +22,13 @@ public:
     ~GetMetaCommunityCommand(){}
     
     vector<string> setParameters();
-    string getCommandName()			{ return "get.metacommunity";		}
+    string getCommandName()			{ return "get.communitytype";		}
     string getCommandCategory()		{ return "OTU-Based Approaches";         }
     
     string getOutputPattern(string);
     
 	string getHelpString();
-    string getCitation() { return "Holmes I, Harris K, Quince C (2012) Dirichlet Multinomial Mixtures: Generative Models for Microbial Metagenomics. PLoS ONE 7(2): e30126. doi:10.1371/journal.pone.0030126 http://www.mothur.org/wiki/Get.metacommunity"; }
+    string getCitation() { return "Holmes I, Harris K, Quince C (2012) Dirichlet Multinomial Mixtures: Generative Models for Microbial Metagenomics. PLoS ONE 7(2): e30126. doi:10.1371/journal.pone.0030126 http://www.mothur.org/wiki/get.communitytype"; }
     string getDescription()		{ return "Assigns samples to bins using a Dirichlet multinomial mixture model"; }
     
     int execute();
@@ -146,7 +146,7 @@ static DWORD WINAPI MyMetaCommunityThreadFunction(LPVOID lpParam){
             pDataArray->outputNames.push_back(pDataArray->matrix[i]);
             
             findQ->printZMatrix(pDataArray->matrix[i], pDataArray->m->getGroups());
-            findQ->printRelAbund(pDataArray->relabunds[i], pDataArray->m->currentBinLabels);
+            findQ->printRelAbund(pDataArray->relabunds[i], pDataArray->m->currentSharedBinLabels);
             
             if(pDataArray->optimizegap != -1 && (numPartitions - pDataArray->minPartition) >= pDataArray->optimizegap && numPartitions >= pDataArray->minpartitions){ break; }