X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getlabelcommand.h;h=7a4d9b5885214696ac38a289f95f8ae20af0c239;hb=cbaa068e77aeb15bb06f0695a36d8f757977ed64;hp=ae4c4db2409cfd96d8e044531605d5176329f3ff;hpb=5e7c1cf6a6dd289a90d27c0eef7eb4675b5e17b7;p=mothur.git

diff --git a/getlabelcommand.h b/getlabelcommand.h
index ae4c4db..7a4d9b5 100644
--- a/getlabelcommand.h
+++ b/getlabelcommand.h
@@ -6,26 +6,38 @@
  *  Mothur
  *
  *  Created by Thomas Ryabin on 1/30/09.
- *  Copyright 2009 __MyCompanyName__. All rights reserved.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  *
  */
 
-#include <iostream>
-#include <fstream>
 #include "command.hpp"
-#include "readmatrix.hpp"
+#include "ordervector.hpp"
+#include "inputdata.h"
 
-class GlobalData;
 
 class GetlabelCommand : public Command {
 public:
+	GetlabelCommand(string);
 	GetlabelCommand();
-	~GetlabelCommand();
-	int execute();
+	~GetlabelCommand(){}
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "get.label";				}
+	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	string getOutputFileNameTag(string, string) { return ""; }
+	string getHelpString();	
+	string getCitation() { return "http://www.mothur.org/wiki/Get.label"; }
+	string getDescription()		{ return "outputs labels"; }
+
+	
+	int execute(); 
+	void help() { m->mothurOut(getHelpString()); }	
+	
 	
 private:
-	GlobalData* globaldata;
-	string filename;
+	string inputfile, listfile, rabundfile, sabundfile, format;
+	bool abort;
+	vector<string> outputNames;
 };
 
-#endif
\ No newline at end of file
+#endif