X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getlabelcommand.h;h=26ec6550b4f6b7fb622b60c1b711fc24c0c4ac40;hb=bd27c2b0612942815b7417c79f7ee41f669a2a34;hp=00945e1b362e6e19cf705cf77ee16a15e5a3ccf0;hpb=8bc3e5b38c2317a1715f53be22fa96455868c281;p=mothur.git

diff --git a/getlabelcommand.h b/getlabelcommand.h
index 00945e1..26ec655 100644
--- a/getlabelcommand.h
+++ b/getlabelcommand.h
@@ -11,28 +11,33 @@
  */
 
 #include "command.hpp"
-#include "readmatrix.hpp"
+#include "ordervector.hpp"
+#include "inputdata.h"
 
-class GlobalData;
 
 class GetlabelCommand : public Command {
 public:
 	GetlabelCommand(string);
-	GetlabelCommand(){}
-	~GetlabelCommand();
-	vector<string> getRequiredParameters();
-	vector<string> getValidParameters();
-	vector<string> getRequiredFiles();
-	map<string, vector<string> > getOutputFiles() { return outputTypes; }
-	int execute();
-	void help();
+	GetlabelCommand();
+	~GetlabelCommand(){}
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "get.label";				}
+	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	string getHelpString();	
+    string getOutputPattern(string) { return ""; }	
+	string getCitation() { return "http://www.mothur.org/wiki/Get.label"; }
+	string getDescription()		{ return "outputs labels"; }
+
+	
+	int execute(); 
+	void help() { m->mothurOut(getHelpString()); }	
+	
 	
 private:
-	GlobalData* globaldata;
-	string filename;
+	string inputfile, listfile, rabundfile, sabundfile, format;
 	bool abort;
 	vector<string> outputNames;
-	map<string, vector<string> > outputTypes;
 };
 
 #endif