X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getlabelcommand.cpp;h=971feb4b33f70f44bcfbabdf6de55caf17bda3cd;hb=4745a956b3116a719f52f341d2a2db84df4817da;hp=40c656bb0286122f013ec9dfe65a6da2ea42244a;hpb=02909d6cae9963ba00dc746969a370fa8ca934fc;p=mothur.git

diff --git a/getlabelcommand.cpp b/getlabelcommand.cpp
index 40c656b..971feb4 100644
--- a/getlabelcommand.cpp
+++ b/getlabelcommand.cpp
@@ -11,7 +11,7 @@
 
 //**********************************************************************************************************************
 
-GetlabelCommand::GetlabelCommand(string option){
+GetlabelCommand::GetlabelCommand(string option)  {
 	try {
 		globaldata = GlobalData::getInstance();
 		abort = false;
@@ -20,40 +20,29 @@ GetlabelCommand::GetlabelCommand(string option){
 		if(option == "help") { help(); abort = true; }
 		
 		else {
-			if (option != "") { cout << "There are no valid parameters for the get.label command." << endl; abort = true; }
-			
-			if ((globaldata->getListFile() == "") && (globaldata->getRabundFile() == "") && (globaldata->getSabundFile() == "")) { cout << "You must read a list, sabund or rabund before you can use the get.label command." << endl; abort = true; }				
+			if ((globaldata->getListFile() == "") && (globaldata->getRabundFile() == "") && (globaldata->getSabundFile() == "")) { m->mothurOut("You must read a list, sabund or rabund before you can use the get.label command."); m->mothurOutEndLine(); abort = true; }				
 		}
 
 	}
 	catch(exception& e) {
-		cout << "Standard Error: " << e.what() << " has occurred in the GetlabelCommand class Function GetlabelCommand. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+		m->errorOut(e, "GetlabelCommand", "GetlabelCommand");
 		exit(1);
 	}
-	catch(...) {
-		cout << "An unknown error has occurred in the GetlabelCommand class function GetlabelCommand. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-		exit(1);
-	}	
-			
 }
 //**********************************************************************************************************************
 
 void GetlabelCommand::help(){
 	try {
-		cout << "The get.label command can only be executed after a successful read.otu command." << "\n";
-		cout << "You may not use any parameters with the get.label command." << "\n";
-		cout << "The get.label command should be in the following format: " << "\n";
-		cout << "get.label()" << "\n";
-		cout << "Example get.label()." << "\n";
+		m->mothurOut("The get.label command can only be executed after a successful read.otu command.\n");
+		m->mothurOut("You may not use any parameters with the get.label command.\n");
+		m->mothurOut("The get.label command should be in the following format: \n");
+		m->mothurOut("get.label()\n");
+		m->mothurOut("Example get.label().\n");
 	}
 	catch(exception& e) {
-		cout << "Standard Error: " << e.what() << " has occurred in the GetlabelCommand class Function help. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+		m->errorOut(e, "GetlabelCommand", "help");
 		exit(1);
 	}
-	catch(...) {
-		cout << "An unknown error has occurred in the GetlabelCommand class function help. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-		exit(1);
-	}	
 }
 
 //**********************************************************************************************************************
@@ -70,15 +59,18 @@ int GetlabelCommand::execute(){
 		
 		filename = globaldata->inputFileName;
 		ifstream in;
-		openInputFile(filename, in);
+		m->openInputFile(filename, in);
 		string label;
 		int numBins = 0;
 		int count = -1;
 		while(in.good()) {
+			
+			if (m->control_pressed) { in.close();  return 0; }
+			
 			if(count > numBins)
 				count = 0;
 			if(count == 0) {
-				cout << label << "\n";
+				m->mothurOut(label); m->mothurOutEndLine();
 				in >> numBins;
 			}
 			in >> label;
@@ -90,12 +82,8 @@ int GetlabelCommand::execute(){
 	}
 
 	catch(exception& e) {
-		cout << "Standard Error: " << e.what() << " has occurred in the GetlabelCommand class Function execute. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+		m->errorOut(e, "GetlabelCommand", "execute");
 		exit(1);
 	}
-	catch(...) {
-		cout << "An unknown error has occurred in the GetlabelCommand class function execute. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-		exit(1);
-	}	
 }