X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getlabelcommand.cpp;h=8535db3203c6da354ce55e1a4f095f07b6d4e487;hb=28bcfc4a41b8b82f66636587e0d4d355d07cbdd1;hp=aba8e8a128f6299feabfee18a8118384974fa206;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git

diff --git a/getlabelcommand.cpp b/getlabelcommand.cpp
index aba8e8a..8535db3 100644
--- a/getlabelcommand.cpp
+++ b/getlabelcommand.cpp
@@ -113,17 +113,17 @@ GetlabelCommand::GetlabelCommand(string option)  {
 			listfile = validParameter.validFile(parameters, "list", true);
 			if (listfile == "not open") { listfile = ""; abort = true; }
 			else if (listfile == "not found") { listfile = ""; }
-			else {  format = "list"; inputfile = listfile; }
+			else {  format = "list"; inputfile = listfile; m->setListFile(listfile); }
 			
 			sabundfile = validParameter.validFile(parameters, "sabund", true);
 			if (sabundfile == "not open") { sabundfile = ""; abort = true; }	
 			else if (sabundfile == "not found") { sabundfile = ""; }
-			else {  format = "sabund"; inputfile = sabundfile; }
+			else {  format = "sabund"; inputfile = sabundfile; m->setSabundFile(sabundfile); }
 			
 			rabundfile = validParameter.validFile(parameters, "rabund", true);
 			if (rabundfile == "not open") { rabundfile = ""; abort = true; }	
 			else if (rabundfile == "not found") { rabundfile = ""; }
-			else {  format = "rabund"; inputfile = rabundfile; }
+			else {  format = "rabund"; inputfile = rabundfile; m->setRabundFile(rabundfile); }
 			
 			if ((listfile == "") && (rabundfile == "") && (sabundfile == "")) { 
 				//is there are current file available for any of these?