X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getgroupscommand.h;h=6d766fb5ebab9f3910e998180bfa92003ca8a68f;hb=8742edef7a51b82834289e570d336f5a81ba1f2b;hp=fda603c1fd46323a3af168cd7ba32777a1fbf5a9;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git

diff --git a/getgroupscommand.h b/getgroupscommand.h
index fda603c..6d766fb 100644
--- a/getgroupscommand.h
+++ b/getgroupscommand.h
@@ -27,6 +27,8 @@ public:
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
 	string getHelpString();	
 	string getCitation() { return "http://www.mothur.org/wiki/Get.groups"; }
+	string getDescription()		{ return "gets sequences from a list, fasta, name, group or taxonomy file from a given group or set of groups"; }
+
 	
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }	
@@ -34,7 +36,7 @@ public:
 	
 private:
 	set<string> names;
-	string accnosfile, fastafile, namefile, groupfile, listfile, taxfile, outputDir, groups;
+	string accnosfile, fastafile, namefile, groupfile, listfile, taxfile, outputDir, groups, sharedfile;
 	bool abort;
 	vector<string> outputNames, Groups;
 	GroupMap* groupMap;
@@ -46,6 +48,7 @@ private:
 	int readList();
 	int readTax();
 	int fillNames();
+	int readShared();
 	
 };