X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getgroupscommand.h;fp=getgroupscommand.h;h=e0fbad80064157e99c3ff21fb97ddfd95bc97317;hb=3094cb29c613d9687e861e1d0cf9104b7141d24e;hp=6d766fb5ebab9f3910e998180bfa92003ca8a68f;hpb=e0dc0bcef2a0f7e1f63abb531dbb1ad533da98ca;p=mothur.git

diff --git a/getgroupscommand.h b/getgroupscommand.h
index 6d766fb..e0fbad8 100644
--- a/getgroupscommand.h
+++ b/getgroupscommand.h
@@ -36,6 +36,9 @@ public:
 	
 private:
 	set<string> names;
+	map<string, string> uniqueToRedundant; //if a namefile is given and the first column name is not selected
+										   //then the other files need to change the unique name in their file to match.
+										   //only add the names that need to be changed to keep the map search quick
 	string accnosfile, fastafile, namefile, groupfile, listfile, taxfile, outputDir, groups, sharedfile;
 	bool abort;
 	vector<string> outputNames, Groups;