X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getgroupscommand.h;fp=getgroupscommand.h;h=6bb608833a418f2c0854c2b8bf0ac9c16a66f790;hb=5b72d1cf3fa48730e5bb70d59cced1e43e1fe424;hp=80230b49b9872ab4633dbd2d4120826b3cc1ee82;hpb=6c2b1e530a5c0bb87040e58a3e410097acdfcc3d;p=mothur.git

diff --git a/getgroupscommand.h b/getgroupscommand.h
index 80230b4..6bb6088 100644
--- a/getgroupscommand.h
+++ b/getgroupscommand.h
@@ -40,7 +40,7 @@ private:
 	map<string, string> uniqueToRedundant; //if a namefile is given and the first column name is not selected
 										   //then the other files need to change the unique name in their file to match.
 										   //only add the names that need to be changed to keep the map search quick
-	string accnosfile, fastafile, namefile, groupfile, listfile, designfile, taxfile, outputDir, groups, sharedfile;
+	string accnosfile, countfile, fastafile, namefile, groupfile, listfile, designfile, taxfile, outputDir, groups, sharedfile;
 	bool abort;
 	vector<string> outputNames, Groups;
 	GroupMap* groupMap;
@@ -48,6 +48,7 @@ private:
 	int readFasta();
 	int readName();
 	int readGroup();
+    int readCount();
 	int readList();
 	int readTax();
 	int fillNames();