X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getgroupscommand.cpp;h=45e0a783e393ba828d8bd74c3884fa45779a92f2;hb=bd27c2b0612942815b7417c79f7ee41f669a2a34;hp=e4f7450b4291e1ca281ebe806dd476fac86019b9;hpb=deba0af0ccdcb6005ed5b2b82649b137c63fbdf7;p=mothur.git

diff --git a/getgroupscommand.cpp b/getgroupscommand.cpp
index e4f7450..45e0a78 100644
--- a/getgroupscommand.cpp
+++ b/getgroupscommand.cpp
@@ -370,7 +370,7 @@ int GetGroupsCommand::execute(){
                 m->mothurOut("\n[NOTE]: The count file should contain only unique names, so mothur assumes your fasta, list and taxonomy files also contain only uniques.\n\n");
             }
             CountTable ct;
-            ct.readTable(countfile);
+            ct.readTable(countfile, true);
             if (!ct.hasGroupInfo()) { m->mothurOut("[ERROR]: your count file does not contain group info, aborting.\n"); return 0; }
                 
             vector<string> gNamesOfGroups = ct.getNamesOfGroups();