X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getgroupcommand.h;h=fb438dfd91caf9a8213e780db8c7b626768873d3;hb=372fb21ea66ced432b109225851a1b80ef0491a3;hp=26190b50139745531e2b8ae06201251c73f530aa;hpb=3117b1c3109121dff476997d3c5db5b47a77729b;p=mothur.git

diff --git a/getgroupcommand.h b/getgroupcommand.h
index 26190b5..fb438df 100644
--- a/getgroupcommand.h
+++ b/getgroupcommand.h
@@ -11,21 +11,33 @@
  */
 
 #include "command.hpp"
-#include "readmatrix.hpp"
-
-class GlobalData;
 
 class GetgroupCommand : public Command {
 public:
+	GetgroupCommand(string);
 	GetgroupCommand();
-	~GetgroupCommand();
-	int execute();
+	~GetgroupCommand() {}
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "get.group";				}
+	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	string getHelpString();	
+    string getOutputPattern(string)	{ return "";  }
+	string getCitation() { return "http://www.mothur.org/wiki/Get.group"; }
+	string getDescription()		{ return "outputs group names"; }
+
+	
+	int execute(); 
+	void help() { m->mothurOut(getHelpString()); }	
+	
 	
 private:
-	GlobalData* globaldata;
-	GroupMap* groupMap;
-	string outputFile;
+	
+	string outputFile, sharedfile, outputDir;
+	vector<string> outputNames;
 	ofstream out;
+	ifstream in;
+	bool abort;
 
 };