X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getgroupcommand.h;h=fb3e810666320ea2cd1c32d4b14b0c2cac08c995;hb=cdf9083dc32543cc640e72e9ca3aee0323cbad45;hp=6750373102c4621d6ed4abf5062f537d55849449;hpb=51cf89e90eef8b300c2786eb1560dd89e6e83445;p=mothur.git

diff --git a/getgroupcommand.h b/getgroupcommand.h
index 6750373..fb3e810 100644
--- a/getgroupcommand.h
+++ b/getgroupcommand.h
@@ -11,19 +11,30 @@
  */
 
 #include "command.hpp"
-#include "readmatrix.hpp"
-
-class GlobalData;
+#include "globaldata.hpp"
 
 class GetgroupCommand : public Command {
 public:
+	GetgroupCommand(string);
 	GetgroupCommand();
 	~GetgroupCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();
+	void help();
 	
 private:
 	GlobalData* globaldata;
 	GroupMap* groupMap;
+	string outputFile, sharedfile;
+	vector<string> outputNames;
+	map<string, vector<string> > outputTypes;
+	ofstream out;
+	ifstream in;
+	bool abort;
+
 };
 
 #endif