X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getgroupcommand.h;h=7924d7b55a708886c0875bf26f173ffa13cc9da1;hb=ce8794490ab1d83adcdb2b92e0302a1e43e17adf;hp=fb3e810666320ea2cd1c32d4b14b0c2cac08c995;hpb=8bc3e5b38c2317a1715f53be22fa96455868c281;p=mothur.git

diff --git a/getgroupcommand.h b/getgroupcommand.h
index fb3e810..7924d7b 100644
--- a/getgroupcommand.h
+++ b/getgroupcommand.h
@@ -11,26 +11,30 @@
  */
 
 #include "command.hpp"
-#include "globaldata.hpp"
 
 class GetgroupCommand : public Command {
 public:
 	GetgroupCommand(string);
 	GetgroupCommand();
-	~GetgroupCommand();
-	vector<string> getRequiredParameters();
-	vector<string> getValidParameters();
-	vector<string> getRequiredFiles();
-	map<string, vector<string> > getOutputFiles() { return outputTypes; }
-	int execute();
-	void help();
+	~GetgroupCommand() {}
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "get.group";				}
+	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	string getOutputFileNameTag(string, string) { return "";  }
+	string getHelpString();	
+	string getCitation() { return "http://www.mothur.org/wiki/Get.group"; }
+	string getDescription()		{ return "outputs group names"; }
+
+	
+	int execute(); 
+	void help() { m->mothurOut(getHelpString()); }	
+	
 	
 private:
-	GlobalData* globaldata;
-	GroupMap* groupMap;
-	string outputFile, sharedfile;
+	
+	string outputFile, sharedfile, outputDir;
 	vector<string> outputNames;
-	map<string, vector<string> > outputTypes;
 	ofstream out;
 	ifstream in;
 	bool abort;