X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getgroupcommand.h;fp=getgroupcommand.h;h=a3e47e0204e36bfa54970c1d5c0e3ecb9398ab90;hb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;hp=0000000000000000000000000000000000000000;hpb=1b73ff67c83892a025e597dabd9df6fe7b58206a;p=mothur.git

diff --git a/getgroupcommand.h b/getgroupcommand.h
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+#ifndef GETGROUPCOMMAND_H
+#define GETGROUPCOMMAND_H
+
+/*
+ *  getgroupcommand.h
+ *  Mothur
+ *
+ *  Created by Thomas Ryabin on 2/2/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+#include "command.hpp"
+
+class GetgroupCommand : public Command {
+public:
+	GetgroupCommand(string);
+	GetgroupCommand();
+	~GetgroupCommand() {}
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "get.group";				}
+	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	string getHelpString();	
+	string getCitation() { return "http://www.mothur.org/wiki/Get.group"; }
+	string getDescription()		{ return "outputs group names"; }
+
+	
+	int execute(); 
+	void help() { m->mothurOut(getHelpString()); }	
+	
+	
+private:
+	
+	string outputFile, sharedfile, outputDir;
+	vector<string> outputNames;
+	ofstream out;
+	ifstream in;
+	bool abort;
+
+};
+
+#endif