X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getcurrentcommand.cpp;h=d74786ce1eaaa8767164a0fbd670d06843388b44;hb=372fb21ea66ced432b109225851a1b80ef0491a3;hp=f73b5600d741d09395eaece04816d6d1859b4ead;hpb=deba0af0ccdcb6005ed5b2b82649b137c63fbdf7;p=mothur.git

diff --git a/getcurrentcommand.cpp b/getcurrentcommand.cpp
index f73b560..d74786c 100644
--- a/getcurrentcommand.cpp
+++ b/getcurrentcommand.cpp
@@ -142,6 +142,8 @@ int GetCurrentCommand::execute(){
 					m->setBiomFile("");
                 }else if (types[i] == "count") {
 					m->setCountTableFile("");
+                }else if (types[i] == "summary") {
+					m->setSummaryFile("");
 				}else if (types[i] == "processors") {
 					m->setProcessors("1");
 				}else if (types[i] == "all") {