X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getcurrentcommand.cpp;h=ca832314d66dbe371e314db292ab6f441d2ee351;hb=e0ce7cbc93d7d2fbb753ca694182db092a0ea0e7;hp=12dcc82ff6a1bfb1a105d3d6deac903e855cea9b;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git

diff --git a/getcurrentcommand.cpp b/getcurrentcommand.cpp
index 12dcc82..ca83231 100644
--- a/getcurrentcommand.cpp
+++ b/getcurrentcommand.cpp
@@ -138,6 +138,8 @@ int GetCurrentCommand::execute(){
 					m->setTaxonomyFile("");
 				}else if (types[i] == "flow") {
 					m->setFlowFile("");
+                }else if (types[i] == "biom") {
+					m->setBiomFile("");
 				}else if (types[i] == "processors") {
 					m->setProcessors("1");
 				}else if (types[i] == "all") {