X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getcurrentcommand.cpp;h=86046b64375ebd151c27e5909c0efdc9d0149bbf;hb=6c2b1e530a5c0bb87040e58a3e410097acdfcc3d;hp=c3b5f0af58ab6ef0627a6a42784c76c2813184bf;hpb=d70a1c2d70c5a516e74880709e3b48cfc1ce0321;p=mothur.git

diff --git a/getcurrentcommand.cpp b/getcurrentcommand.cpp
index c3b5f0a..86046b6 100644
--- a/getcurrentcommand.cpp
+++ b/getcurrentcommand.cpp
@@ -140,7 +140,7 @@ int GetCurrentCommand::execute(){
 					m->setFlowFile("");
                 }else if (types[i] == "biom") {
 					m->setBiomFile("");
-                }else if (types[i] == "counttable") {
+                }else if (types[i] == "count") {
 					m->setCountTableFile("");
 				}else if (types[i] == "processors") {
 					m->setProcessors("1");