X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getcurrentcommand.cpp;h=86046b64375ebd151c27e5909c0efdc9d0149bbf;hb=159fd324dfecacb6617669246d85c787ae67f630;hp=c3b5f0af58ab6ef0627a6a42784c76c2813184bf;hpb=f06b339c5fc4b6d1b9d2a08fe16bf7670bf7aeb4;p=mothur.git

diff --git a/getcurrentcommand.cpp b/getcurrentcommand.cpp
index c3b5f0a..86046b6 100644
--- a/getcurrentcommand.cpp
+++ b/getcurrentcommand.cpp
@@ -140,7 +140,7 @@ int GetCurrentCommand::execute(){
 					m->setFlowFile("");
                 }else if (types[i] == "biom") {
 					m->setBiomFile("");
-                }else if (types[i] == "counttable") {
+                }else if (types[i] == "count") {
 					m->setCountTableFile("");
 				}else if (types[i] == "processors") {
 					m->setProcessors("1");