X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=getcoremicrobiomecommand.h;h=80def83dc27d947df1d5f13a16315a38f279b514;hb=a0f1fca79d2ddfa7ad36b4485039c68b5704fe8d;hp=c8aaab349efdf568b5a24556cf81280e178f3bc5;hpb=f6b5fea6e0fcc395235dfbfb466b9b6a031b540a;p=mothur.git

diff --git a/getcoremicrobiomecommand.h b/getcoremicrobiomecommand.h
index c8aaab3..80def83 100644
--- a/getcoremicrobiomecommand.h
+++ b/getcoremicrobiomecommand.h
@@ -26,7 +26,9 @@ public:
     string getCommandName()			{ return "get.coremicrobiome";			}
     string getCommandCategory()		{ return "OTU-Based Approaches";		} 
     //commmand category choices: Sequence Processing, OTU-Based Approaches, Hypothesis Testing, Phylotype Analysis, General, Clustering and Hidden
-    string getHelpString();	
+    
+	string getHelpString();	
+    string getOutputPattern(string);	
     string getCitation() { return "http://www.mothur.org/wiki/Get.coremicrobiome"; }
     string getDescription()		{ return "determines the fraction of OTUs that are found in varying numbers of samples for different minimum relative abundances"; }